1. Dodt HU, Leischner U, Schierloh A?,et al.Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain[J]. Nature Methods,2007, 4(4):331-336.
2. Hillman EMC, Voleti V, Li W, et al. Light-sheet microscopy in neuroscience[J]. Annual Review of Neuroscience, 2019, 42:295-313.
3. Susaki EA, Ueda HR.?Whole-body and whole-organ clearing and imaging techniques with single-cell resolution: toward organism-level systems biology in mammals[J]. Cell?Chemical?Biology, 2016, 23(1):137-157.
4. Tainaka K, Kuno A, Kubota SI, et al.Chemical principles in tissue?clearing and staining protocols for whole-body cell profiling[J].?Annual Review of?Cell?and Developmental?Biology, 2016, 32:713-741.
5. Kuwajima T, Sitko AA, Bhansali P, et al. ClearT: a?detergent- and solvent-free clearing method for neuronal and non-neuronal tissue[J].?Development, 2013, 140(6):1364-1368.
6. 汪建茹.ReagentTF: 一种快速及标记兼容的鼠脑组织光透明方法[D].武汉:华中科技大学, 2016.
Wang JR.?ReagentTF:A rapid and marker-compatible method for optical transparency of mouse brain tissue?[D].Wuhan:Huazhong University of Science and Technology,2016.?
7. Ke MT, Fujimoto S, Imai T: SeeDB: a?simple and morphology-preserving optical clearing agent for neuronal circuit reconstruction[J]. Nature Neuroscience, 2013, 16(8):1154-1161.
8 Hohberger B, Baumgart C, Bergua A: Optical clearing of the eye using the See Deep Brain technique[J].?Eye (Lond), 2017, 31(10):1496-1502.
9. Chen L, Li G, Li Y, et al. UbasM: an effective balanced optical clearing method for intact biomedical imaging[J]. Scientific Reports, 2017, 7(1)?:12218.
10. Hou B, Zhang D, Zhao S, et al.?Scalable and diI-compatible optical clearance of the mammalian brain[J]. Front Neuroanat, 2015, 9:19.
11. Staudt T, Lang MC, Medda R, et al.?2,2′-Thiodiethanol: a?new water soluble mounting medium for high resolution optical microscopy[J]. Microscopy Research and Technique, 2007, 70(1):1-9.
12. Liu YC, Chiang AS.?High-resolution confocal imaging and three-dimensional rendering[J].?Methods,?2003, 30(1):86-93.
13. Hama H, Kurokawa H, Kawano H?,et al. Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain[J].?Nature Neuroscience, 2011, 14(11):1481-1488.
14. Decroix L, Van Muylder V, Desender L, et al.?Tissue clearing for confocal imaging of native and bio-artificial skeletal muscle[J].?Biotechnic & Histochemistry, 2015, 90(6):424-431.
15. Oren R, Fellus-Alyagor L, Addadi Y,et al.?Whole organ blood and lymphatic vessels imaging (WOBLI)[J]. ?Scientific Reports,?2018, 8(1):1412.
16. Hama H, Hioki H, Namiki K?,et al.?ScaleS: an optical clearing palette for biological imaging[J]. Nature Neuroscience,?2015, 18(10):1518-1529.
17. Susaki E A, Tainaka K, Perrin D, et al. Advanced CUBIC protocols for whole-brain and?whole-body clearing and imaging[J]. Nature Protocols, 2015, 10(11): 1709–1727.
18. Kubota SI, Takahashi K, Nishida J?,et al.?Whole-body profiling of cancer metastasis with single-cell resolution[J].?Cell?Report,?2017, 20(1):236-250.
19. Fumoto S, Nishimura K, Nishida K,?et al.?Three-dimensional imaging of the Intracellular fate of plasmid DNA and transgene expression: ZsGreen1 and tissue clearing method CUBIC are an optimal combination for multicolor deep imaging in murine tissues[J].?PLoS One,?2016, 11(1):e0148233.
20. Liu AK, Hurry ME, Ng OT,?et al. Bringing CLARITY to the human brain: visualization of Lewy pathology in three dimensions[J].?Neuropathology and Applied Neurobiology,?2016, 42(6):573-587.
21. Herculano-Houzel S.?The human brain in numbers: a linearly scaled-up primate brain[J].??Frontiers in Human Neuroscience,?2009, 3:31.
22. Lai HM, Liu AKL, Ng HHM,?et al.?Next generation histology methods for three-dimensional imaging of fresh and archival human brain tissues[J]. Nature Communications,?2018, 9(1):1066.
23. Li W, Germain RN, Gerner MY: Multiplex, quantitative cellular analysis in large tissue volumes with clearing-enhanced 3D microscopy (Ce3D)[J]. Proceedings of the National Academy of Sciences of the United States of America,?2017, 114(35):E7321-E7330.
24. Li W, Germain RN, Gerner MY.?High-dimensional cell-level analysis of tissues with Ce3D multiplex volume imaging[J].?Nature Protocols,?2019, 14(6):1708-1733.
25. Bossolani GDP, Pintelon I, Detrez JD,?et al.?Comparative analysis reveals Ce3D as optimal clearing method for in toto imaging of the mouse intestine[J]. Neurogastroenterol Motil,?2019, 31(5):e13560.
26. Chung K, Wallace J, Kim SY,?et al.Structural and molecular interrogation of intact biological systems[J]. Nature,?2013, 497(7449):332-337.
27. Zheng H, Rinaman L.?Simplified CLARITY for visualizing immunofluorescence labeling in the developing rat brain[J].?Brain Structure and Function,?2015, 221(4):2375-2383.
28. Tomer R, Ye L, Hsueh B,?et al.?Advanced CLARITY for rapid and high-resolution imaging of intact tissues[J]. Nature Protocols,?2014, 9(7):1682-1697.
29. Yang B, Treweek JB, Kulkarni RP,?et al.?Single-cell phenotyping within transparent intact tissue through whole-body clearing[J].?Cell,?2014, 158(4):945-958.
30. Zhang MD, Tortoriello G, Hsueh B,?et al.?Neuronal calcium-binding proteins 1/2 localize to dorsal root ganglia and excitatory spinal neurons and are regulated by nerve injury[J].?Proceedings of the National Academy of Sciences of the United States of America,?2014, 111(12):E1149-1158.
31. Spence RD, Kurth F, Itoh N,?et al.?Bringing CLARITY to gray matter atrophy[J]. Neuroimage,?2014, 101:625-632.
32. Ando K, Laborde Q, Lazar A,?et al.?Inside Alzheimer brain with CLARITY: senile plaques, neurofibrillary tangles and axons in 3-D[J]. Acta Neuropathologica,?2014, 128(3):457-459.
33. Phillips J, Laude A, Lightowlers R,?et al.?Development of passive CLARITY and immunofluorescent labelling of multiple proteins in human cerebellum: understanding mechanisms of neurodegeneration in mitochondrial disease[J]. Scientific Reports,?2016, 6:26013.
34. Lee H, Park JH, Seo I,?et al.?Improved application of the electrophoretic tissue clearing technology, CLARITY, to intact solid organs including brain, pancreas, liver, kidney, lung, and intestine[J]. BMC?Developmental?Biology, 2014, 14:48.
35. Saritas T, Puelles VG, Su XT,?et al. Optical clearing in the kidney reveals potassium-mediated tubule remodeling[J]. Cell?Reports,?2018, 25(10):2668-2675.
36. Cronan MR, Rosenberg AF, Oehlers SH,?et al.?CLARITY and PACT-based imaging of adult zebrafish and mouse for whole-animal analysis of infections[J]. Disease?Models?& Mechanisms,?2015, 8(12):1643-1650.
37. Font-Burgada J, Shalapour S, Ramaswamy S,?et al.?Hybrid periportal hepatocytes regenerate the injured liver without giving rise to cancer[J]. Cell,?2015, 162(4):766-779.
38. ??Greenbaum1?A, Chan1?KY,Dobreva1?T,et al.?Bone CLARITY: Clearing, imaging, and computational analysis of osteoprogenitors within intact bone marrow[J].Science Translational Medicine,?2017,?9(387):?e6518.
39. Treweek JB, Chan KY, Flytzanis NC,?et al.?Whole-body tissue stabilization and selective extractions via tissue-hydrogel hybrids for high-resolution intact circuit mapping and phenotyping[J]. Nature Protoco,?2015, 10(11):1860-1896.
40. Dabrowska N, Joshi S, Williamson J,?et al. Parallel pathways of seizure generalization[J]. Brain,?2019, 142(8):2336-2351.
41. Chung K,Wallace1?J, Kim?SY,?et al. Structural and molecular interrogation of intact biological systems[J].?Nature,2013,497:332–337.
42. Park?YG, Sohn?CH,Chen?R,et al.Protection of tissue physicochemical properties using polyfunctional crosslinkers[J].?Nature Biotechnology,2019,37:73–83.
43. Murray E, Cho JH, Goodwin D, et al.?Simple, scalable proteomic imaging for high-dimensional profiling of intact systems[J]. Cell,?2015, 163(6):1500-1514.
44. Lee E, Choi J, Jo Y,?et al.?ACT-PRESTO: Rapid and consistent tissue clearing and labeling method for 3-dimensional (3D) imaging[J]. Scientific Reports,?2016, 6:18631.
45. Dai HK , Lee SJ , Lee E , et al. Tissue-clearing technique and cutaneous nerve biopsies: quantification of the intraepidermal nerve-fiber density using active clarity technique-pressure related efficient and stable transfer of macromolecules into organs[J]. Journal of Clinical Neurology (Seoul, Korea), 2019, 15(4):537-544.
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